CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GH21568
(
Drosophila grimshawi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0129029
T43534_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0155474
RRM
46
115
LIVRNISYKSTDETLREHFGQWGTLEDVQILKRGDGKLVGCAFVQYETINQATKAIAHANGKEMLGRKVF
FBpp0155474
RRM
236
306
VFIKNVPFDAEDADLRKVCRKFGVVNYAIINRESVSGHSKGTAFVKFKAKESADLCLQAGTEFTLLNDVLD
FBpp0155474
RRM
384
461
LSIHNLPLNYDNEKLKQMATSYTGFRPHECRVMREQKVTPEHPQGKSKGFGFLSFDTHQRALAALRKLNNNPTIFGTQ
Links
Other
RRM
family RBPs
Other
Drosophila grimshawi
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GF11912
Drosophila ananassae
FBgn0088951
N
0.891
GG19902
Drosophila erecta
FBgn0112102
N
0.895
CG4806
Drosophila melanogaster
FBgn0260456
N
0.900
GI19540
Drosophila mojavensis
FBgn0142277
N
0.895
GL11105
Drosophila persimilis
FBgn0148715
N
0.854
GA18446-RA
Drosophila pseudoobscura
FBgn0078448
N
0.854
GM11803
Drosophila sechellia
FBgn0166745
N
0.900
GD24928
Drosophila simulans
FBgn0196242
N
0.900
GJ21111
Drosophila virilis
FBgn0208244
N
0.909
GK21872
Drosophila willistoni
FBgn0223857
N
0.890
GE11426
Drosophila yakuba
FBgn0229232
N
0.900