B9NB85_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0011s10050 T45616_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0011s10050.1 RRM 20 83

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

9 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NOVA1 Anolis carolinensis ENSACAG00000000477 I 0.000
estExt_GenewiseH_1.C_6000020 Branchiostoma floridae estExt_GenewiseH_1.C_6000020 I 0.000
LOC100389932 Callithrix jacchus ENSCJAG00000006217 I 0.000
NOVA1 Canis familiaris ENSCAFG00000012492 I 0.000
NOVA1 Cavia porcellus ENSCPOG00000002579 I 0.000
Nova1 Dipodomys ordii ENSDORG00000012633 I 0.000
NOVA1 Gorilla gorilla ENSGGOG00000016495 I 0.000
ENSG00000248163 Homo sapiens ENSG00000248163 I 0.000
NOVA1 Homo sapiens ENSG00000139910 D 0.000
ENSG00000249644 Homo sapiens ENSG00000249644 I 0.000
NOVA1 Loxodonta africana ENSLAFG00000006455 I 0.000
LOC722459 Macaca mulatta ENSMMUG00000004271 I 0.000
NOVA1 Monodelphis domestica ENSMODG00000001830 I 0.000
Nova1 Mus musculus ENSMUSG00000021047 I 0.000
NOVA1 Oryctolagus cuniculus ENSOCUG00000017622 I 0.000
NOVA1 Pan troglodytes ENSPTRG00000006229 I 0.000
ENSPPYG00000005714 Pongo pygmaeus ENSPPYG00000005714 I 0.000
NOVA1 Pteropus vampyrus ENSPVAG00000002564 I 0.000
Nova1 Rattus norvegicus ENSRNOG00000031440 I 0.000
NOVA1 Sorex araneus ENSSARG00000002599 I 0.000
XP_001176230.1 Strongylocentrotus purpuratus XP_001176230.1 N 0.000
XP_790705.1 Strongylocentrotus purpuratus XP_790705.1 N 0.000
XP_001175715.1 Strongylocentrotus purpuratus XP_001175715.1 N 0.000
NOVA1 Taeniopygia guttata ENSTGUG00000011799 I 0.000
NOVA1 Takifugu rubripes ENSTRUG00000006617 I 0.000
NOVA1 Tetraodon nigroviridis ENSTNIG00000011634 I 0.000
NOVA1 Tupaia belangeri ENSTBEG00000009774 I 0.000
NOVA1 Vicugna pacos ENSVPAG00000007807 I 0.000
AAH74252 Xenopus laevis AAH74252 I 0.000
nova1 Xenopus tropicalis ENSXETG00000010244 I 0.000