B9I5N8_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0013s04390 T45637_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.746
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.732
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0013s04390.1 RRM 138 208

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.746
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.732
XM_002884402.1 Arabidopsis lyrata fgenesh2_kg.3__407__AT3G04500.1 I 0.873
AT3G04500 Arabidopsis thaliana AT3G04500-TAIR-G I 0.873
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.746
BRADI3G12840 Brachypodium distachyon BRADI3G12840 I 0.915
BRADI3G49130 Brachypodium distachyon BRADI3G49130 I 0.859
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.718
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.718
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.746
RBM42 Canis familiaris ENSCAFG00000006925 I 0.746
PK16312.1 Cannabis sativa PK16312.1 I 0.944
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.746
Cucsa.178480 Cucumis sativus Cucsa.178480 I 0.930
rbm42 Danio rerio ENSDARG00000039910 I 0.732
LOC100051102 Equus caballus ENSECAG00000018215 I 0.746
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.746
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.746
Glyma11g01300.1 Glycine max Glyma11g01300.1 I 0.930
Glyma20g36570.1 Glycine max Glyma20g36570.1 I 0.958
Glyma10g30900.1 Glycine max Glyma10g30900.1 I 0.930
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.746
RBM42 Homo sapiens ENSG00000126254 D 0.746
chr5.LjT18P14.100.nd Lotus japonicus chr5.LjT18P14.100.nd N 0.792
LjSGA_021949.1 Lotus japonicus LjSGA_021949.1 I 0.915
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.746
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.746
MDP0000320908 Malus x domestica MDP0000320908 I 0.915
MDP0000283678 Malus x domestica MDP0000283678 I 0.915
cassava22669.valid.m1 Manihot esculenta cassava22669.valid.m1 I 0.930
cassava22670.valid.m1 Manihot esculenta cassava22670.valid.m1 N 0.778
Medtr1g093610 Medicago truncatula Medtr1g093610 I 0.915
RBM42 Microcebus murinus ENSMICG00000009880 I 0.746
mgf008981m Mimulus guttatus mgf008981m I 0.778
mgf018525m Mimulus guttatus mgf018525m I 0.803
mgf021739m Mimulus guttatus mgf021739m I 0.944
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.746
Rbm42 Mus musculus ENSMUSG00000036733 I 0.746
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.746
NCLIV_021850 Neospora caninum NCLIV_021850 N 0.718
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.746
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.746
BGIOSIBCE028936 Oryza indica BGIOSIBCE028936 I 0.915
BGIOSIBCE007866 Oryza indica BGIOSIBCE007866 I 0.845
LOC_Os08g45240 Oryza sativa LOC_Os08g45240 I 0.915
LOC_Os02g40900 Oryza sativa LOC_Os02g40900 I 0.831
RBM42 Oryzias latipes ENSORLG00000003387 I 0.746
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.746
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.746
PDK_20s1301681g005 Phoenix dactylifera PDK_20s1301681g005 I 0.944
PDK_20s1323974g003 Phoenix dactylifera PDK_20s1323974g003 I 0.901
PDK_20s1329112g001 Phoenix dactylifera PDK_20s1329112g001 N 0.789
e_gw1.156.67.1 Physcomitrella patens e_gw1.156.67.1 I 0.859
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.746
B9IPA5_POPTR Populus trichocarpa POPTR_0019s03570 I 0.986
RBM42 Procavia capensis ENSPCAG00000013053 I 0.746
ppa010477m Prunus persica ppa010477m I 0.915
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.746
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.746
29680.m001693 Ricinus communis 29680.m001693 I 0.930
gw1.0.1780.1 Selaginella moellendorfii gw1.0.1780.1 I 0.806
RBM42 Sorex araneus ENSSARG00000010724 I 0.746
Sb02g038420 Sorghum bicolor Sb02g038420 I 0.930
SB04G026430 Sorghum bicolor Sb04g026430 I 0.803
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.746
SPPG_03010 Spizellomyces punctatus SPPG_03010 I 0.718
RBM42 Sus scrofa ENSSSCG00000002905 I 0.746
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.746
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.746
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.746
TGGT1_017860 Toxoplasma gondii TGGT1_017860 N 0.718
TGME49_003080 Toxoplasma gondii TGME49_003080 N 0.718
TGVEG_046310 Toxoplasma gondii TGVEG_046310 N 0.718
GSVIVG00023509001 Vitis vinifera GSVIVG00023509001 I 0.901
GSVIVG00016104001 Vitis vinifera GSVIVG00016104001 I 0.901
A2VDB3 Xenopus laevis A2VDB3 I 0.732
AAI29698 Xenopus laevis AAI29698 I 0.732
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.732
GRMZM2G125529 Zea mays GRMZM2G125529 I 0.803
GRMZM2G068255 Zea mays GRMZM2G068255 I 0.930