CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PVX_089205
(
Plasmodium vivax
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PVX_089205
T47501_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
MAL8P1.40
M179_0.6
Plasmodium falciparum
WUACAUR
RNAcompete
Ray et al.(2013)
RNCMPT00197
0.964
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PVX_089205
RRM
9
77
IFIGSIPKDVTEEELKAEASKYGTITQVYYVPATGQSPRGWAFITYKQRSEAYKAIEALDYKCIFPNSQ
PVX_089205
RRM
157
226
VFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDSNGRNKGYGFVSFNNPESALNAIKGMHGFYVSGKHLK
Links
Other
RRM
family RBPs
Other
Plasmodium vivax
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PBANKA_070740
Plasmodium berghei
PBANKA_070740
I
0.921
PCHAS_071670
Plasmodium chabaudi
PCHAS_071670
I
0.928
MAL8P1.40
Plasmodium falciparum
MAL8P1.40
D
0.964
PKH_050780
Plasmodium knowlesi
PKH_050780
N
0.928