CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
MAL8P1.40
(
Plasmodium falciparum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
MAL8P1.40
T47137_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
MAL8P1.40
M179_0.6
Plasmodium falciparum
WUACAUR
RNAcompete
Ray et al.(2013)
RNCMPT00197
(Direct)
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M179_0.6
RRM
9
77
IFIGSIPKDVTEEELKTEAAKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKAIEALDYKCIFPNSQ
M179_0.6
RRM
152
221
VFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIKGMHGFYVSGKHLK
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MAL8P1.40
RRM
9
77
IFIGSIPKDVTEEELKTEAAKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKAIEALDYKCIFPNSQ
MAL8P1.40
RRM
152
221
VFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIKGMHGFYVSGKHLK
Links
Other
RRM
family RBPs
Other
Plasmodium falciparum
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PVX_089205
Plasmodium vivax
PVX_089205
I
0.964
PCHAS_071670
Plasmodium chabaudi
PCHAS_071670
I
0.964
PBANKA_070740
Plasmodium berghei
PBANKA_070740
I
0.957
PKH_050780
Plasmodium knowlesi
PKH_050780
N
0.914