CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1.C_100240
(
Cochliobolus heterostrophus C5
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_Genewise1.C_100240
T51162_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_100240
RRM
71
140
VFVGNVDYGASPEEIQAHFQSIGSINRVTILLDKFTGHPKGYAYVEFTEPHLVNEALVLDNSQFRNRNLK
Links
Other
RRM
family RBPs
Other
Cochliobolus heterostrophus C5
RBPs
59 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TRMT2A
Anolis carolinensis
ENSACAG00000007994
N
0.000
TRMT2A
Gallus gallus
ENSGALG00000002094
N
0.000
TRMT2A
Gasterosteus aculeatus
ENSGACG00000012965
N
0.000
TRMT2A
Takifugu rubripes
ENSTRUG00000013546
N
0.000
TRMT2A
Tetraodon nigroviridis
ENSTNIG00000016761
N
0.000
AAI42551
Xenopus laevis
AAI42551
N
0.000
trmt2a
Xenopus tropicalis
ENSXETG00000006323
N
0.000