CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.5.1084.1
(
Ostreococcus RCC809
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
gw1.5.1084.1
T53295_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.5.1084.1
RRM
7
77
IYVGHVPHGFYEAQMREYFGQFGEVTRVKVSRNKKTGKSKHYAFVEFKHPEVAEIVAESMNNYLLANQVLK
Links
Other
RRM
family RBPs
Other
Ostreococcus RCC809
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gw1.11.214.1
Batrachochytrium dendrobatidis
gw1.11.214.1
N
0.704
gw1.3.766.1
Micromonas pusilla
gw1.3.766.1
N
0.732
gwEuk.5.447.1
Ostreococcus lucimarinus
gwEuk.5.447.1
N
0.972
0500010280
Ostreococcus tauri
0500010280
N
0.930
estExt_fgenesh2_pg.C_120136
Selaginella moellendorfii
estExt_fgenesh2_pg.C_120136
N
0.704