chr1.LjT29L06.170.nd (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr1.LjT29L06.170.nd T55814_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr1.LjT29L06.170.nd RRM 1 47
chr1.LjT29L06.170.nd RRM 84 150

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.205570 Cucumis sativus Cucsa.205570 N 0.748
Glyma19g39850.1 Glycine max Glyma19g39850.1 N 0.785
Glyma03g37240.1 Glycine max Glyma03g37240.1 N 0.793
MDP0000271362 Malus x domestica MDP0000271362 N 0.719
cassava4050.m1 Manihot esculenta cassava4050.m1 N 0.726
cassava4049.m1 Manihot esculenta cassava4049.m1 N 0.726
cassava4047.m1 Manihot esculenta cassava4047.m1 N 0.726
cassava4046.m1 Manihot esculenta cassava4046.m1 N 0.726
cassava24707.valid.m1 Manihot esculenta cassava24707.valid.m1 N 0.726
cassava24706.valid.m1 Manihot esculenta cassava24706.valid.m1 N 0.726
cassava4048.m1 Manihot esculenta cassava4048.m1 N 0.726
cassava1173.valid.m1 Manihot esculenta cassava1173.valid.m1 N 0.726
cassava1174.valid.m1 Manihot esculenta cassava1174.valid.m1 N 0.726
Medtr8g068270 Medicago truncatula Medtr8g068270 N 0.905
PDK_20s13009412g004 Phoenix dactylifera PDK_20s13009412g004 N 0.744
PDK_20s1395611g001 Phoenix dactylifera PDK_20s1395611g001 N 0.741
B9I9S0_POPTR Populus trichocarpa POPTR_0014s12440 N 0.726
B9I7H7_POPTR Populus trichocarpa POPTR_0013s01700 N 0.704
B9GSA0_POPTR Populus trichocarpa POPTR_0002s20650 N 0.704
ppa009033m Prunus persica ppa009033m N 0.748
ppa009045m Prunus persica ppa009045m N 0.748
29986.m001610 Ricinus communis 29986.m001610 N 0.719
Sb09g018110 Sorghum bicolor Sb09g018110 N 0.739
GSVIVG00027997001 Vitis vinifera GSVIVG00027997001 N 0.726