CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
igs.C169-scaffold_4-gm_586
(
Chlorella vulgaris
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
igs.C169-scaffold_4-gm_586
T57023_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
igs.C169-scaffold_4-gm_586
RRM
155
225
LFVARVSYDATEKKLKREFEEYGPVKRVRLVTQKDSGKPRGYAFVEFEHKNDMKTAYKMADGRKIEGRRVV
Links
Other
RRM
family RBPs
Other
Chlorella vulgaris
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
IGS.gm_29_00073
Chlorella NC64A
IGS.gm_29_00073
I
0.803
Genemark1.2518_g
Coccomyxa C 169
Genemark1.2518_g
N
1.000
Medtr8g093540
Medicago truncatula
Medtr8g093540
N
0.704