IGS.gm_29_00073 (Chlorella NC64A)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 IGS.gm_29_00073 T53528_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRNP70
M068_0.6 		Homo sapiens RWUCAAG RNAcompete
Ray et al.(2013)
RNCMPT00070 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
IGS.gm_29_00073 RRM 123 193

Links

Other RRM family RBPs
Other Chlorella NC64A RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Genemark1.2518_g Coccomyxa C 169 Genemark1.2518_g N 0.803
igs.C169-scaffold_4-gm_586 Chlorella vulgaris igs.C169-scaffold_4-gm_586 N 0.803
snrnp70 Xenopus tropicalis ENSXETG00000022919 I 0.732
SNRNP70 Anolis carolinensis ENSACAG00000013276 I 0.732
SNRNP70 Ornithorhynchus anatinus ENSOANG00000005213 I 0.718
Snrnp70 Mus musculus ENSMUSG00000063511 I 0.718
SNRNP70 Macaca mulatta ENSMMUG00000004928 I 0.718
SNRNP70 Myotis lucifugus ENSMLUG00000011766 I 0.718
SNRNP70 Oryctolagus cuniculus ENSOCUG00000015081 I 0.718
Snrnp70 Rattus norvegicus ENSRNOG00000020763 I 0.718
SNRNP70 Tursiops truncatus ENSTTRG00000017099 I 0.718
SNRNP70 Spermophilus tridecemlineatus ENSSTOG00000013988 I 0.718
SNRNP70 Loxodonta africana ENSLAFG00000028536 I 0.718
SNRNP70 Pan troglodytes ENSPTRG00000011277 I 0.718
ENSPPYG00000010234 Pongo pygmaeus ENSPPYG00000010234 I 0.718
SNRNP70 Gorilla gorilla ENSGGOG00000008245 I 0.718
Medtr8g093540 Medicago truncatula Medtr8g093540 N 0.718
SNRNP70 Canis familiaris ENSCAFG00000003711 I 0.718
RU17_BOVIN Bos taurus ENSBTAG00000001996 I 0.718
Ame_R005855 Ailuropoda melanoleuca Ame_R005855 I 0.718
SNRNP70 Cavia porcellus ENSCPOG00000019589 I 0.718
LOC100392779 Callithrix jacchus ENSCJAG00000000193 I 0.718
snrnp70 Danio rerio ENSDARG00000077126 I 0.718
SNRNP70 Homo sapiens ENSG00000104852 D 0.718
SNRNP70 Erinaceus europaeus ENSEEUG00000005666 I 0.718
Snrnp70 Dipodomys ordii ENSDORG00000010228 I 0.718
Glyma11g07200.1 Glycine max Glyma11g07200.1 N 0.704
Glyma01g38120.1 Glycine max Glyma01g38120.1 N 0.704
chr4.CM0165.550.nd Lotus japonicus chr4.CM0165.550.nd N 0.704
SNRNP70 Gasterosteus aculeatus ENSGACG00000000448 I 0.704
Cucsa.127380 Cucumis sativus Cucsa.127380 I 0.704