CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ppa008108m
(
Prunus persica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ppa008108m
T58393_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ppa008108m
RRM
74
143
LFIRGLGADTTSDSLRSLFSAFGDLDEAIVIPDKATGKSKGYGFVTFKHADSALLALKEPSKKIDGRVTV
ppa008108m
RRM
170
222
IYVGSVPFDISSERLLSTFSAYGEIEEGPLGFDKATGKSKGFAFFVYKTEEAP
Links
Other
RRM
family RBPs
Other
Prunus persica
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK03611.1
Cannabis sativa
PK03611.1
N
0.736
MDP0000709988
Malus x domestica
MDP0000709988
N
0.800