CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PPA11035
(
Pristionchus pacificus
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
PPA11035
T00758_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PPA11035
CCCH ZF
22
48
KDKVNCSFYFKIGACRHGSKCSRTHNV
PPA11035
RRM
90
152
DFFEEIFSELNNKYGEIEEMNVCDNIGEHMIGNVYIKFMDETSADKAVADLNANRWFNGEPIY
PPA11035
CCCH ZF
160
176
DFREACCRQYELGGCNK
Links
Other
CCCH ZF,RRM
family RBPs
Other
Pristionchus pacificus
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
WUBG_09132
Wuchereria bancrofti
WUBG_09132
N
0.714
LOAG_10291
Loa loa
LOAG_10291
N
0.714
Bm1_56100
Brugia malayi
Bm1_56100
N
0.714