CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TRV_01025
(
Trichophyton verrucosum
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
TRV_01025
T01674_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
TRV_01025
CCCH ZF
280
297
RAYRTCFKGPTCPYVHDP
TRV_01025
CCCH ZF
298
324
NKVAICKDFLQTGNCDAGVACDLSHDP
TRV_01025
CCCH ZF
327
351
ERSPACLHFLRGRCTNPSCRYTHVH
TRV_01025
CCCH ZF
354
375
PGAPVCRDFAILGYCSKGASCE
TRV_01025
CCCH ZF
381
397
ECPDYANTGNCGNKKCP
Links
Other
CCCH ZF
family RBPs
Other
Trichophyton verrucosum
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ARB_05847
Arthroderma benhamiae
ARB_05847
N
1.000
TERG_05591
Trichophyton rubrum
TERG_05591
N
0.881
TESG_01626
Trichophyton tonsurans
TESG_01626
N
0.873
TEQG_05649
Trichophyton equinum
TEQG_05649
N
0.873