CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CPSF4L
(
Callithrix jacchus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSCJAG00000019911
T02375_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000037016
CCCH ZF
50
74
EKTVVCKHWLRGLCKKGDPCKFLHQ
ENSCJAP00000037016
CCCH ZF
78
93
TRRPECCFYSTFGDCS
ENSCJAP00000037016
CCCH ZF
106
130
KNRDCPWYDQGFYKDGPLCKYHHVP
ENSCJAP00000037016
CCCH ZF
131
151
RIMCLNYLVGFCPKEPKCQFV
Links
Other
CCCH ZF
family RBPs
Other
Callithrix jacchus
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPSF4L
Pan troglodytes
ENSPTRG00000009598
N
0.706
ENSPPYG00000008589
Pongo pygmaeus
ENSPPYG00000008589
N
0.706
CPSF4L
Homo sapiens
ENSG00000187959
N
0.706