CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Zc3h7b
(
Dipodomys ordii
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSDORG00000013794
T02513_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000012969
CCCH ZF
506
519
NKQDCKYGDNCTFA
ENSDORP00000012969
CCCH ZF
633
653
CRHEVRYGCLREDSCHFAHSF
ENSDORP00000012969
CCCH ZF
903
928
EFRLCDRLQKGKACPDGDKCRCAHGQ
Links
Other
CCCH ZF
family RBPs
Other
Dipodomys ordii
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZC3H7B
Felis catus
ENSFCAG00000003670
N
1.000
ZC3H7B
Loxodonta africana
ENSLAFG00000013268
N
0.820