CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSDORG00000015663
(
Dipodomys ordii
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSDORG00000015663
T02518_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000014738
CCCH ZF
18
29
RYYKTGTCIHET
ENSDORP00000014738
CCCH ZF
31
48
ARGHCVKNGLHCAFAHGP
ENSDORP00000014738
CCCH ZF
290
316
YKSTKCNDMRQTGFCPRGPFCAFAHAE
Links
Other
CCCH ZF
family RBPs
Other
Dipodomys ordii
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
UNKL
Felis catus
ENSFCAG00000010643
N
0.965
UNKL
Pteropus vampyrus
ENSPVAG00000016649
N
0.965
UNKL
Myotis lucifugus
ENSMLUG00000011207
N
0.947
UNKL
Procavia capensis
ENSPCAG00000017060
N
0.930