CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC100147314
(
Equus caballus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSECAG00000019359
T02536_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSECAP00000016963
CCCH ZF
127
142
ATQCAFGARCRFLHDV
ENSECAP00000016963
CCCH ZF
154
175
GPRCVLFETFGRCPAGVTCRFA
Links
Other
CCCH ZF
family RBPs
Other
Equus caballus
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DUS3L
Otolemur garnettii
ENSOGAG00000016549
N
0.805
DUS3L
Canis familiaris
ENSCAFG00000018762
N
0.786
ENSTGUG00000014885
Taeniopygia guttata
ENSTGUG00000014885
N
0.718