CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CPSF4L
(
Macropus eugenii
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSMEUG00000004051
T02812_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMEUP00000003682
CCCH ZF
1
23
TVVCKHWLRGLCKRSDQCKFLHQ
ENSMEUP00000003682
CCCH ZF
27
52
TKMPECYFYSKFGECCNKECLFLHAD
ENSMEUP00000003682
CCCH ZF
55
81
SKIRDCPWYDQGFCKYVGPLCKFRHMR
ENSMEUP00000003682
CCCH ZF
80
102
MRRVLCINYLVGFCPEGPGCRFA
Links
Other
CCCH ZF
family RBPs
Other
Macropus eugenii
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPSF4
Homo sapiens
ENSG00000160917
N
0.745
CPSF4L
Tursiops truncatus
ENSTTRG00000005243
N
0.735
CPSF4L
Homo sapiens
ENSG00000187959
N
0.725
CPSF4L
Pan troglodytes
ENSPTRG00000009598
N
0.725
ENSPPYG00000008589
Pongo pygmaeus
ENSPPYG00000008589
N
0.725