CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GG12456
(
Drosophila erecta
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
FBgn0104744
T03708_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0131002
CCCH ZF
77
99
CTKYDETTGVCPEGDECPYLHRT
FBpp0131002
CCCH ZF
124
140
RGYCVKNGLHCAFAHGM
FBpp0131002
CCCH ZF
244
263
EWGEPGNCEAGDNCQYCHTR
FBpp0131002
CCCH ZF
273
299
YKSTKCNDVQQAGYCPRSVFCAFAHVE
Links
Other
CCCH ZF
family RBPs
Other
Drosophila erecta
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GE23979
Drosophila yakuba
FBgn0241121
N
0.989
unk
Drosophila melanogaster
FBgn0004395
N
0.989
GM23588
Drosophila sechellia
FBgn0178453
N
0.989
GD18402
Drosophila simulans
FBgn0189927
N
0.989
GA18308-RA
Drosophila pseudoobscura
FBgn0078313
N
0.977
GL23594
Drosophila persimilis
FBgn0161184
N
0.977
GJ22639
Drosophila virilis
FBgn0209743
N
0.977
GF18028
Drosophila ananassae
FBgn0095046
N
0.966
GH23839
Drosophila grimshawi
FBgn0131296
N
0.955
GI24572
Drosophila mojavensis
FBgn0147294
N
0.955