CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GD12982
(
Drosophila simulans
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
FBgn0184706
T03779_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0211384
CCCH ZF
425
449
EKMPVCRYYLRGVCVREDCPYLHKK
FBpp0211384
CCCH ZF
452
472
SKTEICIDFVRGYCPLAAECN
Links
Other
CCCH ZF
family RBPs
Other
Drosophila simulans
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GM24934
Drosophila sechellia
FBgn0179796
N
1.000
GG15077
Drosophila erecta
FBgn0107331
N
1.000
ZC3H3
Drosophila melanogaster
FBgn0035900
N
1.000
GE21301
Drosophila yakuba
FBgn0238568
N
1.000