CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
pie-1
(
Caenorhabditis elegans
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Y49E10.14
T04184_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Y49E10.14.1
CCCH ZF
99
125
YKTRLCDAFRREGYCPYNDNCTYAHGQ
Y49E10.14.1
CCCH ZF
185
210
NRRQICHNFERGNCRYGPRCRFIHVE
Y49E10.14.2
CCCH ZF
99
125
YKTRLCDAFRREGYCPYNDNCTYAHGQ
Y49E10.14.2
CCCH ZF
185
210
NRRQICHNFERGNCRYGPRCRFIHVE
Links
Other
CCCH ZF
family RBPs
Other
Caenorhabditis elegans
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CRE19897
Caenorhabditis remanei
CRE19897
N
0.811
CJA17345
Caenorhabditis japonica
CJA17345
N
0.736
CBN10094
Caenorhabditis brenneri
CBN10094
N
0.736
CBG11755
Caenorhabditis briggsae
CBG11755
N
0.736