CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LmjF31.0080
(
Leishmania major
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
LmjF31.0080
T04343_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LmjF31.0080
CCCH ZF
127
152
ERQTACCFNLQGSCKFGDGCRFLHDD
LmjF31.0080
CCCH ZF
154
165
KGRACQFGAKCR
Links
Other
CCCH ZF
family RBPs
Other
Leishmania major
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LmxM30.0080
Leishmania mexicana
LmxM30.0080
N
1.000
LinJ31_V3.0090
Leishmania infantum
LinJ31_V3.0090
N
1.000
LbrM31_V2.0080
Leishmania braziliensis
LbrM31_V2.0080
N
0.868