CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gm1.52800006
(
Emiliania huxleyi
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
gm1.52800006
T05490_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gm1.52800006
CCCH ZF
106
129
AQVCKDFQNGLCNRGASCKFSHEQ
gm1.52800006
CCCH ZF
136
152
SAAGMCSRGASCRFRHE
gm1.52800006
CCCH ZF
176
200
SDQPRCLDFLSGRCTRGDSCRFSHA
Links
Other
CCCH ZF
family RBPs
Other
Emiliania huxleyi
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gm1.2400112
Emiliania huxleyi
gm1.2400112
N
1.000