CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G047528
(
Zea mays
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
GRMZM2G047528
T05708_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G047528_P01
CCCH ZF
212
236
QDKAHCPFHLKTGACRFGLRCSRVH
Links
Other
CCCH ZF
family RBPs
Other
Zea mays
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SB04G022813
Sorghum bicolor
Sb04g022813
N
0.960
MDP0000692633
Malus x domestica
MDP0000692633
N
0.960
MDP0000264809
Malus x domestica
MDP0000264809
N
0.960
B9N0I0_POPTR
Populus trichocarpa
POPTR_0004s23730
N
0.960
BRADI3G45896
Brachypodium distachyon
BRADI3G45896
N
0.880
Medtr2g005290
Medicago truncatula
Medtr2g005290
N
0.880
Cucsa.114380
Cucumis sativus
Cucsa.114380
N
0.840