chr1.CM0078.80.nc (Lotus japonicus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 chr1.CM0078.80.nc T05990_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0078.80.nc CCCH ZF 312 339
chr1.CM0078.80.nc CCCH ZF 367 390
chr1.CM0078.80.nc CCCH ZF 394 419
chr1.CM0078.80.nc CCCH ZF 420 442

Links

Other CCCH ZF family RBPs
Other Lotus japonicus RBPs

2 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava30463.valid.m1 Manihot esculenta cassava30463.valid.m1 N 0.851
GRMZM2G012041 Zea mays GRMZM2G012041 N 0.772