CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Minc02201
(
Meloidogyne incognita
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Minc02201
T06413_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc02201
CCCH ZF
77
102
QLEICREYQRGQCVRSEQDCKYAHPP
Minc02201
CCCH ZF
120
136
KGRCSRENPKCKYLHPP
Links
Other
CCCH ZF
family RBPs
Other
Meloidogyne incognita
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Bm1_32170
Brugia malayi
Bm1_32170
N
0.791
CRE16793
Caenorhabditis remanei
CRE16793
N
0.767
mbl-1
Caenorhabditis elegans
K02H8.1
N
0.767
CJA18722
Caenorhabditis japonica
CJA18722
N
0.767
CBN06301
Caenorhabditis brenneri
CBN06301
N
0.767
CBG15968
Caenorhabditis briggsae
CBG15968
N
0.767
LOAG_11974
Loa loa
LOAG_11974
N
0.744
MBNL2
Homo sapiens
ENSG00000139793
I
0.705
LOC100403733
Callithrix jacchus
ENSCJAG00000004294
I
0.705
MBNL3
Felis catus
ENSFCAG00000009604
N
0.705