CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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71408
(
Helobdella robusta
)
CCHC ZF,KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00013 (KH_1)
IPR001878
IPR018111
71408
T07033_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
71408
KH
184
273
NIKVSEKIVIPQEDYPLLNFVGLLIGPRGNTLKTLEKETGATIIIRGKGSVKEGKLGTKNGIPLPGQDEPLHAYVTSTNPDSVKKAIERI
71408
CCHC ZF
328
345
ILCTVCGGAGHIAPDCKQ
Links
Other
CCHC ZF,KH
family RBPs
Other
Helobdella robusta
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_pg.C_1320011
Capitella teleta
estExt_fgenesh1_pg.C_1320011
N
0.731
BGIBMGA013450
Bombyx mori
BGIBMGA013450
N
0.704