CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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nasonia_NCBI_hmm952384
(
Nasonia vitripennis
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
nasonia_NCBI_hmm952384
T07143_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
nasonia_NCBI_hmm952384
RRM
12
82
VYISNLPFSLTNNDLFKLLEDHGKIVKVTVVKDKRTRRSKGVAFVLFLTPGDAQNCATALNNTEIGGRKVK
nasonia_NCBI_hmm952384
CCHC ZF
105
122
TSCYECGEEGHLSYQCKK
Links
Other
CCHC ZF,RRM
family RBPs
Other
Nasonia vitripennis
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm6916
Apis mellifera
amel4_ncbi_hmm6916
N
0.775