CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Sjc_0024180
(
Schistosoma japonicum
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
Sjc_0024180
T07627_0.6
SDSPB (2008-Sep-5)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPRT0000002271
RRM
12
82
VYISNLPFSLTNNDIHQILQPYGKVVRVTVVKDKESRKSKGVTFVLFLDKNDAHNCANKLNNVQMFGRTLR
CPRT0000002271
CCHC ZF
105
122
SRCYECGSFGHLSYKCEK
Links
Other
CCHC ZF,RRM
family RBPs
Other
Schistosoma japonicum
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Q6DJI9
Xenopus laevis
Q6DJI9
I
0.708
AAH75189
Xenopus laevis
AAH75189
I
0.708