CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AMSG_10378
(
Thecamonas trahens
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
AMSG_10378
T07830_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AMSG_10378T0
CCHC ZF
27
44
KGCFHCGQEGHIKRDCPN
Links
Other
CCHC ZF
family RBPs
Other
Thecamonas trahens
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgeneshEH_pg.39__71
Emiliania huxleyi
fgeneshEH_pg.39__71
N
0.722
Aqu1.204527
Amphimedon queenslandica
Aqu1.204527
N
0.722
AT2G15700
Arabidopsis thaliana
AT2G15700-TAIR-G
N
0.722