CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CIMG_00638
(
Coccidioides immitis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CIMG_00638
T07925_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CIMG_00638T0
CCHC ZF
50
67
DACHNCGQPGHFSRECPE
CIMG_00638T0
CCHC ZF
73
90
GACFNCGEEGHNKAECPN
CIMG_00638T0
CCHC ZF
96
113
GTCRICQAEGHPAFECPD
CIMG_00638T0
CCHC ZF
117
134
DVCKNCKGEGHKTKDCTE
CIMG_00638T0
CCHC ZF
265
282
PKCDNCGEIGHTRRGCKQ
CIMG_00638T0
CCHC ZF
292
307
VKCVICKEIGHRARDC
CIMG_00638T0
CCHC ZF
315
332
SGCRNCGNPDHHAKQCPE
CIMG_00638T0
CCHC ZF
339
356
VECKKCQQVGHFAKDCPE
CIMG_00638T0
CCHC ZF
362
379
RACRNCGEEGHMSKECDK
CIMG_00638T0
CCHC ZF
386
403
VTCRNCEKTGHMSRDCPE
CIMG_00638T0
CCHC ZF
410
427
VQCTNCKEMGHTFRRCNK
Links
Other
CCHC ZF
family RBPs
Other
Coccidioides immitis
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MCYG_01078
Microsporum canis
MCYG_01078
N
0.702