CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PGTG_00139
(
Puccinia graminis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
PGTG_00139
T08114_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGTT_00139
CCHC ZF
334
351
KQCYNCLAVGHLAHSCKD
Links
Other
CCHC ZF
family RBPs
Other
Puccinia graminis
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PGTG_06037
Puccinia graminis
PGTG_06037
N
1.000
PGTG_20179
Puccinia graminis
PGTG_20179
N
0.944
PTTG_04859
Puccinia triticina
PTTG_04859
N
0.944
PTTG_09432
Puccinia triticina
PTTG_09432
N
0.944
PGTG_19705
Puccinia graminis
PGTG_19705
N
0.944
PGTG_15933
Puccinia graminis
PGTG_15933
N
0.944
PGTG_07378
Puccinia graminis
PGTG_07378
N
0.944
PGTG_09899
Puccinia graminis
PGTG_09899
N
0.944
PGTG_01495
Puccinia graminis
PGTG_01495
N
0.944
PTTG_09799
Puccinia triticina
PTTG_09799
N
0.889