CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PGTG_07446
(
Puccinia graminis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
PGTG_07446
T08157_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGTT_07446
CCHC ZF
43
60
AECYNCSEKGHRKADCPN
Links
Other
CCHC ZF
family RBPs
Other
Puccinia graminis
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PGTG_20157
Puccinia graminis
PGTG_20157
N
0.944
PGTG_20533
Puccinia graminis
PGTG_20533
N
0.722
PGTG_05616
Puccinia graminis
PGTG_05616
N
0.722
PGTG_18334
Puccinia graminis
PGTG_18334
N
0.722
PGTG_13717
Puccinia graminis
PGTG_13717
N
0.722
PGTG_12401
Puccinia graminis
PGTG_12401
N
0.722