CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
PITG_10643
(
Phytophthora infestans
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
PITG_10643
T08267_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PITG_10643T0
CCHC ZF
206
223
NLCFYCKEVGHRIANCPR
Links
Other
CCHC ZF
family RBPs
Other
Phytophthora infestans
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PITG_18407
Phytophthora infestans
PITG_18407
N
1.000
s_461461
Phytophthora sojae
s_461461
N
0.778
s_471879
Phytophthora sojae
s_471879
N
0.778
s_471923
Phytophthora sojae
s_471923
N
0.778
s_474215
Phytophthora sojae
s_474215
N
0.778
s_457845
Phytophthora sojae
s_457845
N
0.778
s_454998
Phytophthora sojae
s_454998
N
0.778
s_442997
Phytophthora sojae
s_442997
N
0.778
s_447230
Phytophthora sojae
s_447230
N
0.778
s_452713
Phytophthora sojae
s_452713
N
0.778
s_438503
Phytophthora sojae
s_438503
N
0.722