CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PTTG_00285
(
Puccinia triticina
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
PTTG_00285
T08319_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PTTG_00285T0
CCHC ZF
238
255
KGCWKCHQIGHHSSACPN
Links
Other
CCHC ZF
family RBPs
Other
Puccinia triticina
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PGTG_11304
Puccinia graminis
PGTG_11304
N
0.778
PTTG_01197
Puccinia triticina
PTTG_01197
N
0.778
PGTG_16667
Puccinia graminis
PGTG_16667
N
0.778
PGTG_18070
Puccinia graminis
PGTG_18070
N
0.778
PGTG_20444
Puccinia graminis
PGTG_20444
N
0.778
PGTG_20096
Puccinia graminis
PGTG_20096
N
0.778
PGTG_10170
Puccinia graminis
PGTG_10170
N
0.778
PGTG_10196
Puccinia graminis
PGTG_10196
N
0.778
PGTG_03664
Puccinia graminis
PGTG_03664
N
0.778
PGTG_07800
Puccinia graminis
PGTG_07800
N
0.778
PGTG_04225
Puccinia graminis
PGTG_04225
N
0.722
PGTG_20536
Puccinia graminis
PGTG_20536
N
0.722
PGTG_04299
Puccinia graminis
PGTG_04299
N
0.722
PTTG_05316
Puccinia triticina
PTTG_05316
N
0.722
PGTG_13886
Puccinia graminis
PGTG_13886
N
0.722
PGTG_10436
Puccinia graminis
PGTG_10436
N
0.722
PGTG_05855
Puccinia graminis
PGTG_05855
N
0.722
PGTG_12541
Puccinia graminis
PGTG_12541
N
0.722
PGTG_10036
Puccinia graminis
PGTG_10036
N
0.722