CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PTTG_06312
(
Puccinia triticina
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
PTTG_06312
T08395_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PTTG_06312T0
CCHC ZF
198
215
FGCSNCGKQGHRSPDCPK
Links
Other
CCHC ZF
family RBPs
Other
Puccinia triticina
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTTG_06758
Puccinia triticina
PTTG_06758
N
0.889
PTTG_03789
Puccinia triticina
PTTG_03789
N
0.778
PGTG_11924
Puccinia graminis
PGTG_11924
N
0.722
PTTG_02420
Puccinia triticina
PTTG_02420
N
0.722
PGTG_10181
Puccinia graminis
PGTG_10181
N
0.722
PGTG_12540
Puccinia graminis
PGTG_12540
N
0.722
PGTG_09338
Puccinia graminis
PGTG_09338
N
0.722
PTTG_09555
Puccinia triticina
PTTG_09555
N
0.722
PTTG_10840
Puccinia triticina
PTTG_10840
N
0.722
CRE24081
Caenorhabditis remanei
CRE24081
N
0.722
PGTG_05139
Puccinia graminis
PGTG_05139
N
0.722