CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DGIL_AUG5s16782g5t1
(
Acyrtosiphon pisum
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
DGIL_AUG5s16782g5t1
T08872_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DGIL_AUG5s16782g5t1
CCHC ZF
433
450
PQCYNCQQFGHMVKRCEQ
Links
Other
CCHC ZF
family RBPs
Other
Acyrtosiphon pisum
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s12533g2t1
Acyrtosiphon pisum
DGIL_AUG5s12533g2t1
N
0.833
DGIL_AUG5s3121g6t1
Acyrtosiphon pisum
DGIL_AUG5s3121g6t1
N
0.833
DGIL_AUG5s8626g2t1
Acyrtosiphon pisum
DGIL_AUG5s8626g2t1
N
0.833
DGIL_AUG5s4347g1t1
Acyrtosiphon pisum
DGIL_AUG5s4347g1t1
N
0.778
DGIL_AUG5s17360g2t1
Acyrtosiphon pisum
DGIL_AUG5s17360g2t1
N
0.778
DGIL_AUG5s13640g1t1
Acyrtosiphon pisum
DGIL_AUG5s13640g1t1
N
0.722