CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
nasonia_NCBI_hmm141244
(
Nasonia vitripennis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
nasonia_NCBI_hmm141244
T09010_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
nasonia_NCBI_hmm141244
CCHC ZF
40
57
IQCYVCSEKGHYARECPQ
Links
Other
CCHC ZF
family RBPs
Other
Nasonia vitripennis
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm37034
Nasonia vitripennis
nasonia_NCBI_hmm37034
N
0.944
nasonia_NCBI_hmm171074
Nasonia vitripennis
nasonia_NCBI_hmm171074
N
0.833
nasonia_NCBI_hmm46134
Nasonia vitripennis
nasonia_NCBI_hmm46134
N
0.833
nasonia_NCBI_hmm18374
Nasonia vitripennis
nasonia_NCBI_hmm18374
N
0.833
PABG_07362
Paracoccidioides brasiliensis
PABG_07362
N
0.722
PABG_07621
Paracoccidioides brasiliensis
PABG_07621
N
0.722
PABG_07827
Paracoccidioides brasiliensis
PABG_07827
N
0.722
PABG_04907
Paracoccidioides brasiliensis
PABG_04907
N
0.722
LOC_Os06g24270
Oryza sativa
LOC_Os06g24270
N
0.722
nasonia_NCBI_hmm284604
Nasonia vitripennis
nasonia_NCBI_hmm284604
N
0.722
nasonia_NCBI_hmm242634
Nasonia vitripennis
nasonia_NCBI_hmm242634
N
0.722
nasonia_NCBI_hmm276984
Nasonia vitripennis
nasonia_NCBI_hmm276984
N
0.722
LOC_Os07g24260
Oryza sativa
LOC_Os07g24260
N
0.722