CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AT4G10460
(
Arabidopsis thaliana
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
AT4G10460-TAIR-G
T09402_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT4G10460.1-P
CCHC ZF
246
263
KGCWICGEEGHFKTSCPN
Links
Other
CCHC ZF
family RBPs
Other
Arabidopsis thaliana
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AT3G43867
Arabidopsis thaliana
AT3G43867-TAIR-G
N
0.889
AT2G07550
Arabidopsis thaliana
AT2G07550-TAIR-G
N
0.778
AT4G04380
Arabidopsis thaliana
AT4G04380-TAIR-G
N
0.722
AT3G45520
Arabidopsis thaliana
AT3G45520-TAIR-G
N
0.722