CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
CJA27527
(
Caenorhabditis japonica
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CJA27527
T09790_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA27527
CCHC ZF
71
88
VQCFKCGVYGHTARICPI
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis japonica
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA21746
Caenorhabditis japonica
CJA21746
N
1.000
CJA25929
Caenorhabditis japonica
CJA25929
N
1.000
CJA13988
Caenorhabditis japonica
CJA13988
N
1.000
CJA15484
Caenorhabditis japonica
CJA15484
N
0.944
CJA14080
Caenorhabditis japonica
CJA14080
N
0.944
CJA05355
Caenorhabditis japonica
CJA05355
N
0.944
CJA00051
Caenorhabditis japonica
CJA00051
N
0.889
CJA24964
Caenorhabditis japonica
CJA24964
N
0.889
CJA16947
Caenorhabditis japonica
CJA16947
N
0.889
CJA16875
Caenorhabditis japonica
CJA16875
N
0.889
CJA29014
Caenorhabditis japonica
CJA29014
N
0.889
CJA08906
Caenorhabditis japonica
CJA08906
N
0.889
CJA15588
Caenorhabditis japonica
CJA15588
N
0.833
CJA19590
Caenorhabditis japonica
CJA19590
N
0.833
CJA20209
Caenorhabditis japonica
CJA20209
N
0.722