CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CRE28229
(
Caenorhabditis remanei
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CRE28229
T09924_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CRE28229
CCHC ZF
399
416
EVCFFCGKVGHFAWECPK
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis remanei
RBPs
37 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os08g20700
Oryza sativa
LOC_Os08g20700
N
0.722
LOC_Os09g01010
Oryza sativa
LOC_Os09g01010
N
0.722
LOC_Os09g03060
Oryza sativa
LOC_Os09g03060
N
0.722
LOC_Os08g19570
Oryza sativa
LOC_Os08g19570
N
0.722
LOC_Os08g19510
Oryza sativa
LOC_Os08g19510
N
0.722
LOC_Os08g11740
Oryza sativa
LOC_Os08g11740
N
0.722
LOC_Os08g11860
Oryza sativa
LOC_Os08g11860
N
0.722
LOC_Os08g16510
Oryza sativa
LOC_Os08g16510
N
0.722
LOC_Os10g03020
Oryza sativa
LOC_Os10g03020
N
0.722
LOC_Os10g18970
Oryza sativa
LOC_Os10g18970
N
0.722
LOC_Os12g18310
Oryza sativa
LOC_Os12g18310
N
0.722
LOC_Os12g24940
Oryza sativa
LOC_Os12g24940
N
0.722
13113.t00051
Oryza sativa
13113.t00051
N
0.722
LOC_Os11g26370
Oryza sativa
LOC_Os11g26370
N
0.722
LOC_Os11g26270
Oryza sativa
LOC_Os11g26270
N
0.722
LOC_Os10g24290
Oryza sativa
LOC_Os10g24290
N
0.722
LOC_Os11g17180
Oryza sativa
LOC_Os11g17180
N
0.722
LOC_Os08g10370
Oryza sativa
LOC_Os08g10370
N
0.722
LOC_Os07g45850
Oryza sativa
LOC_Os07g45850
N
0.722
LOC_Os04g05340
Oryza sativa
LOC_Os04g05340
N
0.722
LOC_Os04g07730
Oryza sativa
LOC_Os04g07730
N
0.722
LOC_Os04g15999
Oryza sativa
LOC_Os04g15999
N
0.722
LOC_Os04g04820
Oryza sativa
LOC_Os04g04820
N
0.722
LOC_Os03g61370
Oryza sativa
LOC_Os03g61370
N
0.722
LOC_Os01g38058
Oryza sativa
LOC_Os01g38058
N
0.722
LOC_Os02g27930
Oryza sativa
LOC_Os02g27930
N
0.722
LOC_Os02g30000
Oryza sativa
LOC_Os02g30000
N
0.722
LOC_Os04g16649
Oryza sativa
LOC_Os04g16649
N
0.722
LOC_Os05g17340
Oryza sativa
LOC_Os05g17340
N
0.722
LOC_Os06g36900
Oryza sativa
LOC_Os06g36900
N
0.722
bhlh128
Oryza sativa
LOC_Os07g13000
N
0.722
LOC_Os07g33170
Oryza sativa
LOC_Os07g33170
N
0.722
LOC_Os05g44500
Oryza sativa
LOC_Os05g44500
N
0.722
LOC_Os05g25740
Oryza sativa
LOC_Os05g25740
N
0.722
LOC_Os05g17900
Oryza sativa
LOC_Os05g17900
N
0.722
LOC_Os05g20490
Oryza sativa
LOC_Os05g20490
N
0.722
LOC_Os01g38049
Oryza sativa
LOC_Os01g38049
N
0.722