CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSGACG00000000946
(
Gasterosteus aculeatus
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ENSGACG00000000946
T10197_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000001219
CCHC ZF
173
190
TKCYRCGREGHLSRTCPE
Links
Other
CCHC ZF
family RBPs
Other
Gasterosteus aculeatus
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSGACG00000005312
Gasterosteus aculeatus
ENSGACG00000005312
N
1.000
ENSGACG00000017709
Gasterosteus aculeatus
ENSGACG00000017709
N
0.944
ENSGACG00000013464
Gasterosteus aculeatus
ENSGACG00000013464
N
0.778