CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CNBP
(
Tupaia belangeri
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ENSTBEG00000012620
T10502_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTBEP00000010922
CCHC ZF
4
21
NECFKCGRSGHWARECPT
ENSTBEP00000010922
CCHC ZF
52
68
DICYRCGESGHLAKDCD
ENSTBEP00000010922
CCHC ZF
72
89
DACYNCGRGGHIAKDCKE
ENSTBEP00000010922
CCHC ZF
96
113
QCCYNCGKPGHLARDCDH
ENSTBEP00000010922
CCHC ZF
117
134
QKCYSCGEFGHIQKDCTK
ENSTBEP00000010922
CCHC ZF
156
173
VNCYRCGESGHLARECTI
Links
Other
CCHC ZF
family RBPs
Other
Tupaia belangeri
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CNBP
Meleagris gallopavo
ENSMGAG00000005152
N
0.953
ENSMODG00000012714
Monodelphis domestica
ENSMODG00000012714
N
0.804
Ame_R018441
Ailuropoda melanoleuca
Ame_R018441
N
0.776