CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBBP6
(
Tetraodon nigroviridis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ENSTNIG00000011614
T10521_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000014564
CCHC ZF
40
56
SCFRCGGTGHHIRNCPS
Links
Other
CCHC ZF
family RBPs
Other
Tetraodon nigroviridis
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBBP6
Takifugu rubripes
ENSTRUG00000010008
N
0.824
RBBP6
Oryzias latipes
ENSORLG00000012764
N
0.765
rbbp6l
Danio rerio
ENSDARG00000037919
N
0.765
XP_002162513.1
Hydra magnipapillata
XP_002162513.1
N
0.765
MDP0000259819
Malus x domestica
MDP0000259819
N
0.706