LOC_Os05g27260 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os05g27260 T11513_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os05g27260.1 CCHC ZF 187 202
LOC_Os05g27260.1 CCHC ZF 223 239
LOC_Os05g27260.1 CCHC ZF 320 337

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

6 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os01g60560 Oryza sativa LOC_Os01g60560 N 0.980
LOC_Os10g14860 Oryza sativa LOC_Os10g14860 N 0.962
LOC_Os05g18310 Oryza sativa LOC_Os05g18310 N 0.961
LOC_Os09g17170 Oryza sativa LOC_Os09g17170 N 0.961
LOC_Os05g51890 Oryza sativa LOC_Os05g51890 N 0.941
LOC_Os04g21090 Oryza sativa LOC_Os04g21090 N 0.941