B9MYP8_POPTR (Populus trichocarpa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 POPTR_0004s20450 T12707_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s20450.1 CCHC ZF 196 213
POPTR_0004s20450.1 CCHC ZF 219 236
POPTR_0004s20450.1 CCHC ZF 238 255
POPTR_0004s20450.1 CCHC ZF 265 282
POPTR_0004s20450.1 CCHC ZF 292 303
POPTR_0004s20450.1 CCHC ZF 316 331
POPTR_0004s20450.1 CCHC ZF 345 362

Links

Other CCHC ZF family RBPs
Other Populus trichocarpa RBPs

4 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HQG5_POPTR Populus trichocarpa POPTR_0009s15750 N 0.831
Cucsa.111740 Cucumis sativus Cucsa.111740 N 0.746
ppa016997m Prunus persica ppa016997m N 0.720
29755.m000430 Ricinus communis 29755.m000430 N 0.700