CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SB01G039556
(
Sorghum bicolor
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
Sb01g039556
T12816_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Sb01g039556.1
CCHC ZF
84
101
MDCYNCGELGHLAHQCPK
Links
Other
CCHC ZF
family RBPs
Other
Sorghum bicolor
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SB04G024240
Sorghum bicolor
Sb04g024240
N
1.000
SB09G018383
Sorghum bicolor
Sb09g018383
N
1.000
LOC_Os10g20570
Oryza sativa
LOC_Os10g20570
N
0.722