CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Aqu1.217207
(
Amphimedon queenslandica
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
Aqu1.217207
T13290_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aqu1.217207
CCHC ZF
86
103
VRCYRCHKVGHIQRDCPE
Links
Other
CCHC ZF
family RBPs
Other
Amphimedon queenslandica
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm80794
Nasonia vitripennis
nasonia_NCBI_hmm80794
N
0.722
MDP0000306612
Malus x domestica
MDP0000306612
N
0.722