CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh1_pm.C_40052
(
Selaginella moellendorfii
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
estExt_fgenesh1_pm.C_40052
T13607_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pm.C_40052
CCHC ZF
893
910
VICYTCKKSGHVASECPD
Links
Other
CCHC ZF
family RBPs
Other
Selaginella moellendorfii
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh2_pg.C_scaffold_4000216
Selaginella moellendorfii
fgenesh2_pg.C_scaffold_4000216
N
0.944
AT4G37705
Arabidopsis thaliana
AT4G37705-TAIR-G
N
0.722