CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh4_pg.C_90152
(
Volvox carteri
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
estExt_fgenesh4_pg.C_90152
T13649_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh4_pg.C_90152
CCHC ZF
16
33
NGCNLCGQLGHQAANCPN
Links
Other
CCHC ZF
family RBPs
Other
Volvox carteri
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
au.g2800_t1
Chlamydomonas reinhardtii
au.g2800_t1
N
1.000
estExt_fgeneshCV_kg.C_200023
Chlorella vulgaris
estExt_fgeneshCV_kg.C_200023
N
0.833
estExt_fgenesh1_pm.C_200079
Coccomyxa C 169
estExt_fgenesh1_pm.C_200079
N
0.833
IGS.gm_2_00437
Chlorella NC64A
IGS.gm_2_00437
N
0.722